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Convert the output of many LDscores to a single dataframe suitable for ldsR

Source: R/data_formats.R
to_celltype_dataset.Rd

Convert the output of many LDscores to a single dataframe suitable for ldsR

Usage

to_celltype_dataset(parent_dir, outdir, ref_snps = NULL)

Arguments

parent_dir

a directory with subdirectories containing LDscore data

outdir

directory to save the parquet files

ref_snps

a character vector of RSIDs corresponding to SNPs used in the full dataset used to generate LDscores. Provide if –thin-annot has been used in the LDSC command to generate ldscores

Examples

if (FALSE) { # \dontrun{
to_celltype_dataset("files/ldsc", "files/ldsc_parquet")
} # }