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Query Open targets for all credible sets containing the variant

get_open_targets_cs.Rd

Query Open targets for all credible sets containing the variant

Usage

get_open_targets_cs(
  variant_id,
  page_size = 500,
  api_url = "https://api.platform.opentargets.org/api/v4/graphql"
)

Arguments

variant_id

in the open targets format chr_pos_ref_alt: 5_100_101_A_C

page_size

number of results per page, default 500

api_url

URL of the Open Targets GraphQL API, default

Value

a dplyr::tibble with the following columns:

  • CHR: chromosome

  • POS: position

  • P: p-value

  • REF: reference allele

  • ALT: alternate allele

  • description: trait description

  • study_id: study ID

Examples

if (FALSE) { # \dontrun{
get_open_targets_cs("7_140459051_C_G")
} # }