Validate statistics columns in a GWAS summary statistics file

Validate statistics columns in a GWAS summary statistics file

Usage

validate_sumstat(tbl, remove_cols = c(""), filter_func, convert_p)

Arguments

tbl

a dplyr::tibble()

remove_cols

Columns that should not be validated

filter_func

handles reporting and writing removed files to disk

convert_p

What value should be used for when P-value has been rounded to 0?

Value

a tbl

Examples

if (FALSE) { # \dontrun{
validate_sumstat(sumstat, remove_cols = "EffectAllele", convert_p = 0)
} # }